No. words: 1242; after pruning: 1216


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:464)  459  0.00 0.22 0.00  UCD025F_C12_BE403167LD11P028H06P028H121F1_092.ab1        1   465 (119)  C UCD025R_C12_BE403167LD11P028H06P028H121R1_092.ab1   (192)   466     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD025R_C12_BE403167LD11P028H06P028H121R1_092.ab1   658 
  428    UCD025F_C12_BE403167LD11P028H06P028H121F1_092.ab1   235 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0