No. words: 1236; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:458)  454  0.00 0.22 0.00  UCD025F_D12_BE403167LD12P028H06P028H121F1_090.ab1        1   459 (125)  C UCD025R_D12_BE403167LD12P028H06P028H121R1_090.ab1   (192)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD025R_D12_BE403167LD12P028H06P028H121R1_090.ab1   652 
  432    UCD025F_D12_BE403167LD12P028H06P028H121F1_090.ab1   239 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0