No. words: 1242; after pruning: 1202


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:465)  464  0.00 0.00 0.00  UCD025F_E12_BE403167LD13P028H06P028H121F1_088.ab1        1   466 (118)  C UCD025R_E12_BE403167LD13P028H06P028H121R1_088.ab1   (192)   466     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C UCD025R_E12_BE403167LD13P028H06P028H121R1_088.ab1   658 
  357    UCD025F_E12_BE403167LD13P028H06P028H121F1_088.ab1   165 
  613  C UCD025R_E12_BE403167LD13P028H06P028H121R1_088.ab1    46 
  625    UCD025F_E12_BE403167LD13P028H06P028H121F1_088.ab1   433 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0 
S Change at: 68; seg lengths: entry 1, contig 1