No. words: 738; after pruning: 712


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.7 (1,1:357)  228  2.42 0.00 0.00  UCD016F_G01_BE403506LD04P012A06A121F1_003.ab1        1   248 (0)  C UCD016R_G01_BE403506LD04P012A06A121R1_003.ab1   (132)   358   111 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  116 nodes

 60 str. conn. components

Path
    1  C UCD016R_G01_BE403506LD04P012A06A121R1_003.ab1   490 
Contig length: old 490, new 490

Contig length: old 490, new 490
New start: 0