No. words: 1136; after pruning: 1110


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (1,1:744)  304  3.39 0.28 0.00  UCD016F_A02_BE403506LD06P012A06A121F1_016.ab1        1   354 (0)  C UCD016R_A02_BE403506LD06P012A06A121R1_016.ab1   (36)   746   392 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1  C UCD016R_A02_BE403506LD06P012A06A121R1_016.ab1   782 
   46    UCD016F_A02_BE403506LD06P012A06A121F1_016.ab1     9 
   58  C UCD016R_A02_BE403506LD06P012A06A121R1_016.ab1   725 
   62    UCD016F_A02_BE403506LD06P012A06A121F1_016.ab1    25 
   74  C UCD016R_A02_BE403506LD06P012A06A121R1_016.ab1   709 
  100    UCD016F_A02_BE403506LD06P012A06A121F1_016.ab1    63 
  116  C UCD016R_A02_BE403506LD06P012A06A121R1_016.ab1   667 
Contig length: old 782, new 782

Contig length: old 782, new 782
New start: 0