No. words: 599; after pruning: 573


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.8 (1,1:342)  165  0.00 0.00 0.00  UCD032F_D07_BE403506Sn24P012A06P036E081F1_057.ab1      172   343 (84)  C UCD032R_D07_BE403506Sn24P012A06P036E081R1_057.ab1   (0)   172     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1    UCD032F_D07_BE403506Sn24P012A06P036E081F1_057.ab1     1 
  219  C UCD032R_D07_BE403506Sn24P012A06P036E081R1_057.ab1   125 
  223    UCD032F_D07_BE403506Sn24P012A06P036E081F1_057.ab1   223 
  259  C UCD032R_D07_BE403506Sn24P012A06P036E081R1_057.ab1    85 
  263    UCD032F_D07_BE403506Sn24P012A06P036E081F1_057.ab1   263 
  283  C UCD032R_D07_BE403506Sn24P012A06P036E081R1_057.ab1    61 
  295    UCD032F_D07_BE403506Sn24P012A06P036E081F1_057.ab1   295 
  303  C UCD032R_D07_BE403506Sn24P012A06P036E081R1_057.ab1    41 
  319    UCD032F_D07_BE403506Sn24P012A06P036E081F1_057.ab1   319 
Contig length: old 427, new 427

Contig length: old 427, new 427
New start: 0