No. words: 560; after pruning: 534


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 2.6 (1,1:173)  149  2.40 0.00 0.00  UCD031F_C09_BE403506Ta13P036G08P012A121F1_075.ab1        8   174 (178)  C UCD031R_C09_BE403506Ta13P036G08P012A121R1_075.ab1   (41)   167     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C UCD031R_C09_BE403506Ta13P036G08P012A121R1_075.ab1   208 
   50    UCD031F_C09_BE403506Ta13P036G08P012A121F1_075.ab1    16 
   54  C UCD031R_C09_BE403506Ta13P036G08P012A121R1_075.ab1   155 
   67    UCD031F_C09_BE403506Ta13P036G08P012A121F1_075.ab1    33 
Contig length: old 386, new 386

Contig length: old 386, new 386
New start: 0 
S Change at: 46; seg lengths: entry 1, contig 1
S Change at: 59; seg lengths: entry 1, contig 1