No. words: 514; after pruning: 488


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.8 (1,1:202)  194  0.00 0.99 0.00  UCD008F_D05_BE403516Ta18P021C03P001D111F1_041.ab1        1   202 (48)  C UCD008R_D05_BE403516Ta18P021C03P001D111F1_041.ab1   (60)   204     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1  C UCD008R_D05_BE403516Ta18P021C03P001D111F1_041.ab1   264 
  117    UCD008F_D05_BE403516Ta18P021C03P001D111F1_041.ab1    55 
  121  C UCD008R_D05_BE403516Ta18P021C03P001D111F1_041.ab1   144 
  137    UCD008F_D05_BE403516Ta18P021C03P001D111F1_041.ab1    75 
  145  C UCD008R_D05_BE403516Ta18P021C03P001D111F1_041.ab1   120 
  153    UCD008F_D05_BE403516Ta18P021C03P001D111F1_041.ab1    91 
  201  C UCD008R_D05_BE403516Ta18P021C03P001D111F1_041.ab1    64 
  205    UCD008F_D05_BE403516Ta18P021C03P001D111F1_041.ab1   143 
  217  C UCD008R_D05_BE403516Ta18P021C03P001D111F1_041.ab1    48 
  221    UCD008F_D05_BE403516Ta18P021C03P001D111F1_041.ab1   159 
Contig length: old 311, new 312

Contig length: old 312, new 312
New start: 0