No. words: 1401; after pruning: 1375


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:773)  615  0.16 0.00 0.00  UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1      154   774 (6)  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   (0)   621     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1     1 
  181  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   594 
  185    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1   185 
  193  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   582 
  197    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1   197 
  209  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   566 
  217    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1   217 
  237  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   538 
  249    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1   249 
  273  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   502 
  277    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1   277 
  297  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   478 
  325    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1   325 
  341  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   434 
  349    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1   349 
  353  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   422 
  441    UCD004F_F01_BE403597AT02P012A02A081F1_005.ab1   441 
  445  C UCD004R_F01_BE403597AT02P012A02A081R1_005.ab1   330 
Contig length: old 780, new 774

Contig length: old 774, new 774
New start: 0