No. words: 1615; after pruning: 1589


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:884)  721  0.27 0.00 0.00  UCD004F_G01_BE403597LD01P012A02A081F1_003.ab1      121   850 (0)  C UCD004R_G01_BE403597LD01P012A02A081R1_003.ab1   (0)   765    36 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1    UCD004F_G01_BE403597LD01P012A02A081F1_003.ab1     1 
  550  C UCD004R_G01_BE403597LD01P012A02A081R1_003.ab1   336 
Contig length: old 885, new 885

Contig length: old 885, new 885
New start: 0