No. words: 1664; after pruning: 1638


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:885)  776  0.00 0.00 0.00  UCD004F_H01_BE403597LD02P012A02A081F1_001.ab1       97   874 (0)  C UCD004R_H01_BE403597LD02P012A02A081R1_001.ab1   (0)   790    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1    UCD004F_H01_BE403597LD02P012A02A081F1_001.ab1     1 
  380  C UCD004R_H01_BE403597LD02P012A02A081R1_001.ab1   507 
  400    UCD004F_H01_BE403597LD02P012A02A081F1_001.ab1   400 
  548  C UCD004R_H01_BE403597LD02P012A02A081R1_001.ab1   339 
  564    UCD004F_H01_BE403597LD02P012A02A081F1_001.ab1   564 
  568  C UCD004R_H01_BE403597LD02P012A02A081R1_001.ab1   319 
  576    UCD004F_H01_BE403597LD02P012A02A081F1_001.ab1   576 
  580  C UCD004R_H01_BE403597LD02P012A02A081R1_001.ab1   307 
  588    UCD004F_H01_BE403597LD02P012A02A081F1_001.ab1   588 
  596  C UCD004R_H01_BE403597LD02P012A02A081R1_001.ab1   291 
Contig length: old 886, new 886

Contig length: old 886, new 886
New start: 0