No. words: 1311; after pruning: 1285


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:894)  405  0.00 0.00 0.00  UCD004F_C02_BE403597LD05P012A02A081F1_012.ab1        1   414 (0)  C UCD004R_C02_BE403597LD05P012A02A081R1_012.ab1   (2)   895   482 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C UCD004R_C02_BE403597LD05P012A02A081R1_012.ab1   897 
   10    UCD004F_C02_BE403597LD05P012A02A081F1_012.ab1     8 
  150  C UCD004R_C02_BE403597LD05P012A02A081R1_012.ab1   748 
  154    UCD004F_C02_BE403597LD05P012A02A081F1_012.ab1   152 
  178  C UCD004R_C02_BE403597LD05P012A02A081R1_012.ab1   720 
  182    UCD004F_C02_BE403597LD05P012A02A081F1_012.ab1   180 
  226  C UCD004R_C02_BE403597LD05P012A02A081R1_012.ab1   672 
  238    UCD004F_C02_BE403597LD05P012A02A081F1_012.ab1   236 
  242  C UCD004R_C02_BE403597LD05P012A02A081R1_012.ab1   656 
Contig length: old 897, new 897

Contig length: old 897, new 897
New start: 0