No. words: 1173; after pruning: 1147


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 1.2 (1,1:892)  246  3.28 0.00 0.00  UCD004F_G02_BE403597LD09P012A02A081F1_004.ab1      265   538 (6)  C UCD004R_G02_BE403597LD09P012A02A081R1_004.ab1   (0)   629   356 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    UCD004F_G02_BE403597LD09P012A02A081F1_004.ab1     1 
  395  C UCD004R_G02_BE403597LD09P012A02A081R1_004.ab1   499 
  403    UCD004F_G02_BE403597LD09P012A02A081F1_004.ab1   403 
  407  C UCD004R_G02_BE403597LD09P012A02A081R1_004.ab1   487 
  419    UCD004F_G02_BE403597LD09P012A02A081F1_004.ab1   419 
  431  C UCD004R_G02_BE403597LD09P012A02A081R1_004.ab1   463 
  435    UCD004F_G02_BE403597LD09P012A02A081F1_004.ab1   435 
  447  C UCD004R_G02_BE403597LD09P012A02A081R1_004.ab1   447 
Contig length: old 893, new 893

Contig length: old 893, new 893
New start: 0