No. words: 1177; after pruning: 1151


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:725)  437  0.89 0.00 0.00  UCD026F_H09_BE403597Sn26P025B03P036H011F1_065.ab1       50   500 (0)  C UCD026R_H09_BE403597Sn26P025B03P036H011R1_065.ab1   (0)   677   227 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1    UCD026F_H09_BE403597Sn26P025B03P036H011F1_065.ab1     1 
  300  C UCD026R_H09_BE403597Sn26P025B03P036H011R1_065.ab1   427 
  304    UCD026F_H09_BE403597Sn26P025B03P036H011F1_065.ab1   304 
  312  C UCD026R_H09_BE403597Sn26P025B03P036H011R1_065.ab1   415 
  324    UCD026F_H09_BE403597Sn26P025B03P036H011F1_065.ab1   324 
  328  C UCD026R_H09_BE403597Sn26P025B03P036H011R1_065.ab1   399 
  332    UCD026F_H09_BE403597Sn26P025B03P036H011F1_065.ab1   332 
  368  C UCD026R_H09_BE403597Sn26P025B03P036H011R1_065.ab1   359 
  372    UCD026F_H09_BE403597Sn26P025B03P036H011F1_065.ab1   372 
  384  C UCD026R_H09_BE403597Sn26P025B03P036H011R1_065.ab1   343 
Contig length: old 726, new 726

Contig length: old 726, new 726
New start: 0