No. words: 1554; after pruning: 1528


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:737)  724  0.14 0.00 0.27  UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1        1   739 (44)  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   (34)   737     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   771 
   62    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1    28 
   86  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   686 
   90    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1    56 
   98  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   674 
  102    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1    68 
  110  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   662 
  114    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1    80 
  157  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   615 
  165    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   131 
  177  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   595 
  181    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   147 
  201  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   571 
  209    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   175 
  213  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   559 
  221    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   187 
  225  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   547 
  249    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   215 
  253  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   519 
  257    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   223 
  305  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   467 
  313    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   279 
  369  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   403 
  381    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   347 
  389  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   383 
  413    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   379 
  433  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   339 
  437    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   403 
  469  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   303 
  477    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   443 
  517  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   255 
  597    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   563 
  601  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   171 
  625    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   591 
  629  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1   143 
  661    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   627 
  673  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1    99 
  681    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   647 
  685  C UCD026R_A10_BE403597Sn27P025B03P036H011R1_080.ab1    87 
  749    UCD026F_A10_BE403597Sn27P025B03P036H011F1_080.ab1   715 
Contig length: old 816, new 817

Contig length: old 817, new 817
New start: 0