No. words: 1501; after pruning: 1475


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:699)  691  0.14 0.14 0.00  UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1        1   700 (67)  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   (33)   701     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   734 
   44    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1    10 
  140  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   595 
  144    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   110 
  148  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   587 
  164    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   130 
  180  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   555 
  184    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   150 
  272  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   463 
  276    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   242 
  292  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   443 
  296    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   262 
  312  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   423 
  316    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   282 
  368  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   367 
  380    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   346 
  384  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   351 
  388    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   354 
  416  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   319 
  424    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   390 
  432  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   303 
  436    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   402 
  440  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   295 
  444    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   410 
  448  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   287 
  460    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   426 
  464  C UCD026R_B10_BE403597Sn28P025B03P036H011R1_078.ab1   271 
  728    UCD026F_B10_BE403597Sn28P025B03P036H011F1_078.ab1   694 
Contig length: old 801, new 801

Contig length: old 801, new 800
New start: 0 
D Change at: 41; seg lengths: entry 0, contig 1