No. words: 1536; after pruning: 1510


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.6 (1,1:714)  701  0.28 0.14 0.00  UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1        2   714 (55)  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   (53)   714     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   767 
   66    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1    13 
  178  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   590 
  186    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1   133 
  202  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   566 
  206    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1   153 
  374  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   394 
  382    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1   329 
  414  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   354 
  418    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1   365 
  434  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   334 
  442    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1   389 
  486  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   282 
  494    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1   441 
  502  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   266 
  510    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1   457 
  522  C UCD026R_E10_BE403597Sn31P025B03P036H011R1_072.ab1   246 
  758    UCD026F_E10_BE403597Sn31P025B03P036H011F1_072.ab1   705 
Contig length: old 821, new 822

Contig length: old 822, new 822
New start: 0