No. words: 1617; after pruning: 1591


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 14.4 (1,1:752)  730  0.40 0.00 0.00  UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1        1   742 (59)  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   (63)   753    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   816 
  134    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1    71 
  138  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   679 
  142    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1    79 
  170  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   647 
  206    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   143 
  218  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   599 
  226    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   163 
  230  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   587 
  234    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   171 
  238  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   579 
  246    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   183 
  250  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   567 
  282    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   219 
  290  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   527 
  294    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   231 
  306  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   511 
  326    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   263 
  330  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   487 
  534    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   471 
  546  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   271 
  630    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   567 
  634  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   183 
  694    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   631 
  698  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1   119 
  730    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   667 
  784  C UCD026R_C04_BE403597Sn31P025H02P036H011R1_028.ab1    33 
  792    UCD026F_C04_BE403597Sn31P025H02P036H011F1_028.ab1   729 
Contig length: old 864, new 864

Contig length: old 864, new 864
New start: 0