No. words: 1171; after pruning: 1145


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:656)  500  0.58 0.00 0.00  UCD026F_F10_BE403597Sn32P025B03P036H011F1_070.ab1      100   613 (0)  C UCD026R_F10_BE403597Sn32P025B03P036H011R1_070.ab1   (0)   558    45 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1    UCD026F_F10_BE403597Sn32P025B03P036H011F1_070.ab1     1 
  314  C UCD026R_F10_BE403597Sn32P025B03P036H011R1_070.ab1   344 
  322    UCD026F_F10_BE403597Sn32P025B03P036H011F1_070.ab1   322 
  326  C UCD026R_F10_BE403597Sn32P025B03P036H011R1_070.ab1   332 
  330    UCD026F_F10_BE403597Sn32P025B03P036H011F1_070.ab1   330 
  338  C UCD026R_F10_BE403597Sn32P025B03P036H011R1_070.ab1   320 
  354    UCD026F_F10_BE403597Sn32P025B03P036H011F1_070.ab1   354 
  366  C UCD026R_F10_BE403597Sn32P025B03P036H011R1_070.ab1   292 
Contig length: old 657, new 657

Contig length: old 657, new 657
New start: 0