No. words: 1315; after pruning: 1289


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:647)  564  2.28 0.16 0.00  UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1       36   648 (53)  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   (0)   614     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1     1 
   87  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   562 
   91    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1    91 
  169  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   480 
  173    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   173 
  255  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   394 
  259    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   259 
  287  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   362 
  291    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   291 
  323  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   326 
  327    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   327 
  375  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   274 
  383    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   383 
  387  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   262 
  391    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   391 
  403  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   246 
  411    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   411 
  427  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   222 
  431    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   431 
  451  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   198 
  469    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   469 
  473  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   176 
  481    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   481 
  497  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   152 
  521    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   521 
  539  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1   110 
  547    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   547 
  556  C UCD026R_D04_BE403597Sn32P025H02P036H011R1_026.ab1    93 
  639    UCD026F_D04_BE403597Sn32P025H02P036H011F1_026.ab1   639 
Contig length: old 701, new 701

Contig length: old 701, new 701
New start: 0 
S Change at: 231; seg lengths: entry 1, contig 1
S Change at: 643; seg lengths: entry 1, contig 1