No. words: 1146; after pruning: 1120


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.6 (1,1:482)  448  1.88 0.00 0.00  UCD026F_G05_BE403597Ta11P025A03P036H011F1_035.ab1        1   479 (68)  C UCD026R_G05_BE403597Ta11P025A03P036H011R1_035.ab1   (116)   483     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD026R_G05_BE403597Ta11P025A03P036H011R1_035.ab1   599 
  215    UCD026F_G05_BE403597Ta11P025A03P036H011F1_035.ab1    99 
  219  C UCD026R_G05_BE403597Ta11P025A03P036H011R1_035.ab1   381 
  589    UCD026F_G05_BE403597Ta11P025A03P036H011F1_035.ab1   473 
Contig length: old 663, new 663

Contig length: old 663, new 663
New start: 0