No. words: 1525; after pruning: 1499


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 12.8 (1,1:707)  697  0.00 0.00 0.14  UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1        5   708 (54)  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   (60)   703     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   763 
   64    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1     8 
   76  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   688 
   84    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1    28 
   88  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   676 
   92    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1    36 
  156  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   608 
  164    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   108 
  172  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   592 
  184    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   128 
  188  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   576 
  208    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   152 
  224  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   540 
  228    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   172 
  236  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   528 
  248    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   192 
  252  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   512 
  256    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   200 
  272  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   492 
  280    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   224 
  292  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   472 
  308    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   252 
  312  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   452 
  372    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   316 
  404  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   360 
  408    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   352 
  416  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   348 
  448    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   392 
  452  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   312 
  456    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   400 
  488  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   276 
  500    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   444 
  516  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   248 
  600    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   544 
  604  C UCD026R_A08_BE403597Ta11P025B03P036H011R1_064.ab1   160 
  752    UCD026F_A08_BE403597Ta11P025B03P036H011F1_064.ab1   696 
Contig length: old 817, new 818

Contig length: old 818, new 818
New start: 0