No. words: 1577; after pruning: 1551


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:776)  743  0.79 0.00 0.00  UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1        1   764 (0)  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   (36)   777    14 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   813 
   48    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1    12 
   52  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   762 
  128    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1    92 
  132  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   682 
  148    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   112 
  156  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   658 
  160    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   124 
  164  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   650 
  180    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   144 
  192  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   622 
  196    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   160 
  212  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   602 
  216    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   180 
  232  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   582 
  240    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   204 
  244  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   570 
  272    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   236 
  280  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   534 
  292    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   256 
  304  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   510 
  308    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   272 
  316  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   498 
  528    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   492 
  536  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   278 
  624    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   588 
  628  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   186 
  648    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   612 
  652  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   162 
  684    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   648 
  688  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   126 
  708    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   672 
  712  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1   102 
  724    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   688 
  738  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1    76 
  766    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   730 
  770  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1    44 
  790    UCD026F_C02_BE403597Ta11P025H02P036H011F1_012.ab1   754 
  794  C UCD026R_C02_BE403597Ta11P025H02P036H011R1_012.ab1    20 
Contig length: old 813, new 813

Contig length: old 813, new 813
New start: 0