No. words: 1182; after pruning: 1156


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:518)  483  1.93 0.00 0.00  UCD026F_H05_BE403597Ta12P025A03P036H011F1_033.ab1        1   519 (60)  C UCD026R_H05_BE403597Ta12P025A03P036H011R1_033.ab1   (84)   519     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C UCD026R_H05_BE403597Ta12P025A03P036H011R1_033.ab1   603 
  190    UCD026F_H05_BE403597Ta12P025A03P036H011F1_033.ab1   106 
  194  C UCD026R_H05_BE403597Ta12P025A03P036H011R1_033.ab1   410 
  375    UCD026F_H05_BE403597Ta12P025A03P036H011F1_033.ab1   291 
  379  C UCD026R_H05_BE403597Ta12P025A03P036H011R1_033.ab1   225 
  599    UCD026F_H05_BE403597Ta12P025A03P036H011F1_033.ab1   515 
Contig length: old 663, new 663

Contig length: old 663, new 663
New start: 0