No. words: 1521; after pruning: 1495


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:699)  694  0.00 0.14 0.00  UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1        1   700 (65)  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   (55)   701     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   756 
   66    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1    10 
   78  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   679 
   94    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1    38 
  146  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   611 
  150    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1    94 
  158  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   599 
  174    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   118 
  202  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   555 
  206    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   150 
  226  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   531 
  230    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   174 
  254  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   503 
  258    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   202 
  290  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   467 
  310    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   254 
  314  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   443 
  322    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   266 
  426  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   331 
  430    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   374 
  518  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1   239 
  666    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   610 
  686  C UCD026R_C08_BE403597Ta13P025B03P036H011R1_060.ab1    71 
  750    UCD026F_C08_BE403597Ta13P025B03P036H011F1_060.ab1   694 
Contig length: old 821, new 821

Contig length: old 821, new 821
New start: 0