No. words: 1195; after pruning: 1169


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 5.2 (1,1:541)  484  2.26 0.19 0.00  UCD026F_B06_BE403597Ta14P025A03P036H011F1_046.ab1       12   541 (56)  C UCD026R_B06_BE403597Ta14P025A03P036H011R1_046.ab1   (67)   531     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCD026R_B06_BE403597Ta14P025A03P036H011R1_046.ab1   598 
  590    UCD026F_B06_BE403597Ta14P025A03P036H011F1_046.ab1   533 
Contig length: old 653, new 654

Contig length: old 654, new 653
New start: 0 
S Change at: 75; seg lengths: entry 3, contig 3
D Change at: 81; seg lengths: entry 3, contig 4
S Change at: 89; seg lengths: entry 3, contig 3