No. words: 1365; after pruning: 1339


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:718)  586  0.50 0.00 0.00  UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1      120   719 (46)  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1   (0)   600     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1     1 
  472  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1   248 
  476    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   476 
  480  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1   240 
  508    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   508 
  512  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1   208 
  532    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   532 
  536  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1   184 
  540    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   540 
  568  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1   152 
  588    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   588 
  616  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1   104 
  620    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   620 
  624  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1    96 
  644    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   644 
  648  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1    72 
  668    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   668 
  672  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1    48 
  680    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   680 
  695  C UCD026R_D08_BE403597Ta14P025B03P036H011R1_058.ab1    25 
  711    UCD026F_D08_BE403597Ta14P025B03P036H011F1_058.ab1   711 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0