No. words: 1526; after pruning: 1500


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:724)  711  0.14 0.28 0.00  UCD026F_E08_BE403597Ta15P025B03P036H011F1_056.ab1        1   724 (58)  C UCD026R_E08_BE403597Ta15P025B03P036H011R1_056.ab1   (18)   726     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C UCD026R_E08_BE403597Ta15P025B03P036H011R1_056.ab1   744 
   28    UCD026F_E08_BE403597Ta15P025B03P036H011F1_056.ab1     9 
  233  C UCD026R_E08_BE403597Ta15P025B03P036H011R1_056.ab1   511 
  237    UCD026F_E08_BE403597Ta15P025B03P036H011F1_056.ab1   218 
  465  C UCD026R_E08_BE403597Ta15P025B03P036H011R1_056.ab1   279 
  489    UCD026F_E08_BE403597Ta15P025B03P036H011F1_056.ab1   470 
  497  C UCD026R_E08_BE403597Ta15P025B03P036H011R1_056.ab1   247 
  657    UCD026F_E08_BE403597Ta15P025B03P036H011F1_056.ab1   638 
  661  C UCD026R_E08_BE403597Ta15P025B03P036H011R1_056.ab1    83 
  669    UCD026F_E08_BE403597Ta15P025B03P036H011F1_056.ab1   650 
  673  C UCD026R_E08_BE403597Ta15P025B03P036H011R1_056.ab1    71 
  705    UCD026F_E08_BE403597Ta15P025B03P036H011F1_056.ab1   686 
  717  C UCD026R_E08_BE403597Ta15P025B03P036H011R1_056.ab1    27 
  725    UCD026F_E08_BE403597Ta15P025B03P036H011F1_056.ab1   706 
Contig length: old 801, new 801

Contig length: old 801, new 802
New start: 0 
I Change at: 41; seg lengths: entry 1, contig 0