No. words: 1620; after pruning: 1594


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.2 (1,1:775)  773  0.00 0.00 0.00  UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1        1   776 (53)  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   (15)   776     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   791 
   19    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1     4 
  151  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   641 
  175    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   160 
  195  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   597 
  219    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   204 
  223  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   569 
  231    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   216 
  235  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   557 
  251    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   236 
  263  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   529 
  271    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   256 
  287  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   505 
  299    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   284 
  307  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   485 
  407    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   392 
  451  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   341 
  455    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   440 
  459  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   333 
  467    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   452 
  495  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   297 
  503    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   488 
  519  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   273 
  535    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   520 
  551  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   241 
  627    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   612 
  635  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   157 
  639    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   624 
  647  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1   145 
  691    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   676 
  699  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1    93 
  703    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   688 
  711  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1    81 
  751    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   736 
  759  C UCD026R_G02_BE403597Ta15P025H02P036H011R1_004.ab1    33 
  787    UCD026F_G02_BE403597Ta15P025H02P036H011F1_004.ab1   772 
Contig length: old 844, new 844

Contig length: old 844, new 844
New start: 0