No. words: 1449; after pruning: 1423


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:704)  680  0.43 0.00 0.00  UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1       15   705 (53)  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1   (0)   691     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1     1 
  447  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1   259 
  519    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   519 
  523  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1   183 
  527    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   527 
  531  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1   175 
  539    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   539 
  547  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1   159 
  571    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   571 
  583  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1   123 
  587    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   587 
  591  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1   115 
  607    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   607 
  611  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1    95 
  619    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   619 
  623  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1    83 
  627    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   627 
  639  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1    67 
  659    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   659 
  682  C UCD026R_F08_BE403597Ta16P025B03P036H011R1_054.ab1    24 
  694    UCD026F_F08_BE403597Ta16P025B03P036H011F1_054.ab1   694 
Contig length: old 758, new 758

Contig length: old 758, new 758
New start: 0