No. words: 1522; after pruning: 1496


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:703)  696  0.28 0.00 0.00  UCD026F_H08_BE403597Ta18P025B03P036H011F1_050.ab1        1   704 (54)  C UCD026R_H08_BE403597Ta18P025B03P036H011R1_050.ab1   (60)   704     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1  C UCD026R_H08_BE403597Ta18P025B03P036H011R1_050.ab1   764 
   64    UCD026F_H08_BE403597Ta18P025B03P036H011F1_050.ab1     4 
   80  C UCD026R_H08_BE403597Ta18P025B03P036H011R1_050.ab1   685 
   88    UCD026F_H08_BE403597Ta18P025B03P036H011F1_050.ab1    28 
  277  C UCD026R_H08_BE403597Ta18P025B03P036H011R1_050.ab1   488 
  281    UCD026F_H08_BE403597Ta18P025B03P036H011F1_050.ab1   221 
  297  C UCD026R_H08_BE403597Ta18P025B03P036H011R1_050.ab1   468 
  301    UCD026F_H08_BE403597Ta18P025B03P036H011F1_050.ab1   241 
  517  C UCD026R_H08_BE403597Ta18P025B03P036H011R1_050.ab1   248 
  661    UCD026F_H08_BE403597Ta18P025B03P036H011F1_050.ab1   601 
  673  C UCD026R_H08_BE403597Ta18P025B03P036H011R1_050.ab1    92 
  677    UCD026F_H08_BE403597Ta18P025B03P036H011F1_050.ab1   617 
  681  C UCD026R_H08_BE403597Ta18P025B03P036H011R1_050.ab1    84 
  761    UCD026F_H08_BE403597Ta18P025B03P036H011F1_050.ab1   701 
Contig length: old 818, new 818

Contig length: old 818, new 818
New start: 0