No. words: 1526; after pruning: 1500


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.8 (1,1:706)  704  0.00 0.00 0.00  UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1        2   707 (51)  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   (62)   706     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   768 
   66    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1     5 
   78  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   691 
   94    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1    33 
  102  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   667 
  106    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1    45 
  158  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   611 
  186    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   125 
  202  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   567 
  214    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   153 
  222  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   547 
  226    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   165 
  254  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   515 
  258    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   197 
  294  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   475 
  298    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   237 
  310  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   459 
  314    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   253 
  366  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   403 
  374    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   313 
  434  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   335 
  442    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   381 
  470  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   299 
  478    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   417 
  490  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   279 
  506    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   445 
  522  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1   247 
  678    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   617 
  682  C UCD026R_A09_BE403597Ta19P025B03P036H011R1_079.ab1    87 
  762    UCD026F_A09_BE403597Ta19P025B03P036H011F1_079.ab1   701 
Contig length: old 819, new 819

Contig length: old 819, new 819
New start: 0