No. words: 1150; after pruning: 1124


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 2.0 (1,1:506)  449  2.97 0.00 0.20  UCD026F_H06_BE403597Ta20P025A03P036H011F1_034.ab1        3   507 (56)  C UCD026R_H06_BE403597Ta20P025A03P036H011R1_034.ab1   (83)   504     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD026R_H06_BE403597Ta20P025A03P036H011R1_034.ab1   587 
  582    UCD026F_H06_BE403597Ta20P025A03P036H011F1_034.ab1   502 
Contig length: old 643, new 643

Contig length: old 643, new 643
New start: 0