No. words: 1525; after pruning: 1499


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.6 (1,1:704)  699  0.14 0.00 0.00  UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1        2   705 (56)  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   (60)   704     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   764 
   64    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1     5 
   72  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   693 
   76    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1    17 
   84  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   681 
   94    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1    35 
   98  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   667 
  106    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1    47 
  158  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   607 
  166    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   107 
  170  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   595 
  182    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   123 
  202  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   563 
  206    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   147 
  222  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   543 
  226    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   167 
  234  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   531 
  258    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   199 
  274  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   491 
  282    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   223 
  342  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   423 
  350    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   291 
  362  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   403 
  374    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   315 
  430  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   335 
  438    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   379 
  486  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1   279 
  666    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   607 
  670  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1    95 
  674    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   615 
  678  C UCD026R_C09_BE403597Ta21P025B03P036H011R1_075.ab1    87 
  758    UCD026F_C09_BE403597Ta21P025B03P036H011F1_075.ab1   699 
Contig length: old 820, new 820

Contig length: old 820, new 820
New start: 0