No. words: 1139; after pruning: 1113


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.4 (1,1:484)  446  2.27 0.00 0.00  UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1        2   485 (85)  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1   (85)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1   569 
  155    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1    71 
  159  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1   411 
  207    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1   123 
  215  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1   355 
  247    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1   163 
  251  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1   319 
  343    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1   259 
  347  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1   223 
  376    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1   292 
  380  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1   190 
  452    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1   368 
  464  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1   106 
  512    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1   428 
  520  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1    50 
  528    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1   444 
  540  C UCD026R_B07_BE403597Ta22P025A03P036H011R1_061.ab1    30 
  564    UCD026F_B07_BE403597Ta22P025A03P036H011F1_061.ab1   480 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0