No. words: 1475; after pruning: 1449


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:710)  702  0.14 0.14 0.00  UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1        1   711 (22)  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1   (30)   712     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1   742 
   42    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1    11 
  136  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1   607 
  140    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1   109 
  156  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1   587 
  160    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1   129 
  464  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1   279 
  484    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1   453 
  488  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1   255 
  624    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1   593 
  628  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1   115 
  648    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1   617 
  652  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1    91 
  656    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1   625 
  660  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1    83 
  672    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1   641 
  676  C UCD026R_D09_BE403597Ta22P025B03P036H011R1_073.ab1    67 
  732    UCD026F_D09_BE403597Ta22P025B03P036H011F1_073.ab1   701 
Contig length: old 764, new 764

Contig length: old 764, new 764
New start: 0