No. words: 1453; after pruning: 1427


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.9 (1,1:711)  683  0.29 0.00 0.14  UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1       18   713 (45)  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1   (0)   695     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1     1 
  117  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1   596 
  121    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   121 
  233  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1   480 
  237    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   237 
  377  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1   336 
  389    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   389 
  437  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1   276 
  449    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   449 
  457  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1   256 
  553    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   553 
  557  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1   156 
  605    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   605 
  613  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1   100 
  617    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   617 
  621  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1    92 
  669    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   669 
  673  C UCD026R_E09_BE403597Ta23P025B03P036H011R1_071.ab1    40 
  697    UCD026F_E09_BE403597Ta23P025B03P036H011F1_071.ab1   697 
Contig length: old 758, new 758

Contig length: old 758, new 758
New start: 0