No. words: 1166; after pruning: 1140


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.5 (1,1:504)  485  0.80 0.00 0.00  UCD026F_G04_BE403597Td03P025A03P036H011F1_020.ab1        4   505 (77)  C UCD026R_G04_BE403597Td03P025A03P036H011R1_020.ab1   (82)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C UCD026R_G04_BE403597Td03P025A03P036H011R1_020.ab1   584 
  565    UCD026F_G04_BE403597Td03P025A03P036H011F1_020.ab1   486 
  569  C UCD026R_G04_BE403597Td03P025A03P036H011R1_020.ab1    16 
  581    UCD026F_G04_BE403597Td03P025A03P036H011F1_020.ab1   502 
Contig length: old 661, new 661

Contig length: old 661, new 661
New start: 0