No. words: 1622; after pruning: 1596


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:788)  782  0.00 0.00 0.13  UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1        1   789 (9)  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   (36)   788     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  394 nodes

 199 str. conn. components

Path
    1  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   824 
   48    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1    12 
   64  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   761 
   68    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1    32 
   92  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   733 
  100    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1    64 
  132  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   693 
  136    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   100 
  144  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   681 
  148    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   112 
  164  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   661 
  196    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   160 
  212  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   613 
  232    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   196 
  236  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   589 
  272    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   236 
  284  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   541 
  292    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   256 
  296  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   529 
  532    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   496 
  540  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   285 
  648    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   612 
  656  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   169 
  708    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   672 
  712  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1   113 
  728    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   692 
  732  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1    93 
  772    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   736 
  780  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1    45 
  808    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   772 
  818  C UCD026R_C01_BE403597Td03P025H02P036H011R1_011.ab1     8 
  822    UCD026F_C01_BE403597Td03P025H02P036H011F1_011.ab1   786 
Contig length: old 833, new 834

Contig length: old 834, new 834
New start: 0