No. words: 976; after pruning: 950


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -2.6 -2.6 (1,1:472)  320  6.67 0.00 0.00  UCD026F_H04_BE403597Td04P025A03P036H011F1_018.ab1        1   405 (0)  C UCD026R_H04_BE403597Td04P025A03P036H011R1_018.ab1   (98)   473    69 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.6       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  130 nodes

 67 str. conn. components

Path
    1  C UCD026R_H04_BE403597Td04P025A03P036H011R1_018.ab1   571 
  110    UCD026F_H04_BE403597Td04P025A03P036H011F1_018.ab1    12 
  114  C UCD026R_H04_BE403597Td04P025A03P036H011R1_018.ab1   458 
  266    UCD026F_H04_BE403597Td04P025A03P036H011F1_018.ab1   168 
  270  C UCD026R_H04_BE403597Td04P025A03P036H011R1_018.ab1   302 
  325    UCD026F_H04_BE403597Td04P025A03P036H011F1_018.ab1   227 
  329  C UCD026R_H04_BE403597Td04P025A03P036H011R1_018.ab1   243 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0 
S Change at: 138; seg lengths: entry 1, contig 1
S Change at: 288; seg lengths: entry 1, contig 1