No. words: 1579; after pruning: 1553


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.2 (1,1:744)  736  0.27 0.00 0.00  UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1        1   745 (22)  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   (67)   745     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   812 
   71    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1     4 
   91  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   722 
  100    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1    33 
  104  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   709 
  108    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1    41 
  132  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   681 
  136    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1    69 
  164  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   649 
  200    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   133 
  216  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   597 
  232    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   165 
  236  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   577 
  240    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   173 
  244  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   569 
  272    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   205 
  280  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   533 
  291    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   224 
  299  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   514 
  303    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   236 
  307  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   506 
  311    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   244 
  319  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   494 
  527    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   460 
  531  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   282 
  647    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   580 
  655  C UCD026R_D01_BE403597Td04P025H02P036H011R1_009.ab1   158 
  807    UCD026F_D01_BE403597Td04P025H02P036H011F1_009.ab1   740 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0