No. words: 1654; after pruning: 1628


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.1 (1,1:787)  770  0.25 0.00 0.25  UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1        2   789 (39)  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   (40)   786     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   826 
   50    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1    11 
   62  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   765 
   66    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1    27 
   94  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   733 
  102    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1    63 
  106  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   721 
  110    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1    71 
  146  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   681 
  150    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   111 
  166  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   661 
  206    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   167 
  218  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   609 
  226    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   187 
  230  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   597 
  234    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   195 
  238  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   589 
  242    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   203 
  246  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   581 
  274    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   235 
  282  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   545 
  293    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   254 
  301  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   526 
  313    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   274 
  317  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   510 
  537    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   498 
  541  C UCD026R_E01_BE403597Td05P025H02P036H011R1_007.ab1   286 
  805    UCD026F_E01_BE403597Td05P025H02P036H011F1_007.ab1   766 
Contig length: old 866, new 867

Contig length: old 867, new 867
New start: 0