No. words: 1594; after pruning: 1568


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:753)  746  0.00 0.00 0.13  UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1        1   754 (14)  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   (73)   753     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   826 
   77    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1     4 
   81  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   746 
   85    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1    12 
  101  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   726 
  109    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1    36 
  141  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   686 
  145    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1    72 
  149  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   678 
  161    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1    88 
  169  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   658 
  209    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   136 
  221  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   606 
  237    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   164 
  241  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   586 
  245    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   172 
  249  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   578 
  261    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   188 
  265  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   562 
  281    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   208 
  289  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   538 
  633    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   560 
  637  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1   190 
  725    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   652 
  729  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1    98 
  733    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   660 
  737  C UCD026R_F01_BE403597Td06P025H02P036H011R1_005.ab1    90 
  817    UCD026F_F01_BE403597Td06P025H02P036H011F1_005.ab1   744 
Contig length: old 840, new 841

Contig length: old 841, new 841
New start: 0