No. words: 1166; after pruning: 1140


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.5 (1,1:510)  476  1.96 0.00 0.00  UCD026F_D05_BE403597Td08P025A03P036H011F1_041.ab1        1   511 (68)  C UCD026R_D05_BE403597Td08P025A03P036H011R1_041.ab1   (76)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C UCD026R_D05_BE403597Td08P025A03P036H011R1_041.ab1   587 
  582    UCD026F_D05_BE403597Td08P025A03P036H011F1_041.ab1   506 
Contig length: old 655, new 655

Contig length: old 655, new 655
New start: 0