No. words: 1465; after pruning: 1439


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:718)  626  1.23 0.00 0.00  UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1        1   653 (0)  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   (93)   719    67 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   812 
   97    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1     4 
  105  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   708 
  109    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1    16 
  113  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   700 
  139    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1    46 
  151  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   662 
  155    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1    62 
  171  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   642 
  183    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1    90 
  187  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   626 
  210    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   117 
  218  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   595 
  226    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   133 
  230  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   583 
  234    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   141 
  238  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   575 
  250    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   157 
  254  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   559 
  262    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   169 
  270  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   543 
  274    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   181 
  290  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   523 
  294    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   201 
  302  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   511 
  306    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   213 
  330  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   483 
  374    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   281 
  386  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   427 
  430    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   337 
  470  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   343 
  490    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   397 
  514  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   299 
  526    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   433 
  550  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   263 
  562    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   469 
  574  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   239 
  578    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   485 
  582  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   231 
  658    UCD026F_H01_BE403597Td08P025H02P036H011F1_001.ab1   565 
  662  C UCD026R_H01_BE403597Td08P025H02P036H011R1_001.ab1   151 
Contig length: old 812, new 812

Contig length: old 812, new 812
New start: 0