No. words: 1610; after pruning: 1584


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.2 (1,1:775)  773  0.00 0.00 0.00  UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1        1   776 (22)  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   (36)   776     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   812 
   48    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1    12 
   60  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   753 
   72    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1    36 
   80  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   733 
   84    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1    48 
   96  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   717 
  100    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1    64 
  132  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   681 
  136    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   100 
  164  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   649 
  172    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   136 
  176  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   637 
  204    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   168 
  212  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   601 
  224    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   188 
  228  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   585 
  240    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   204 
  244  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   569 
  276    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   240 
  284  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   529 
  296    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   260 
  300  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   513 
  312    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   276 
  316  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   497 
  520    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   484 
  540  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   273 
  556    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   520 
  564  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   249 
  620    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   584 
  624  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   189 
  648    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   612 
  652  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   161 
  708    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   672 
  712  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1   101 
  724    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   688 
  728  C UCD026R_A02_BE403597Td09P025H02P036H011R1_016.ab1    85 
  808    UCD026F_A02_BE403597Td09P025H02P036H011F1_016.ab1   772 
Contig length: old 834, new 834

Contig length: old 834, new 834
New start: 0