No. words: 1218; after pruning: 1192


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.0 (1,1:552)  520  1.45 0.18 0.00  UCD026F_F05_BE403597Td10P025A03P036H011F1_037.ab1        1   552 (60)  C UCD026R_F05_BE403597Td10P025A03P036H011R1_037.ab1   (52)   554     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCD026R_F05_BE403597Td10P025A03P036H011R1_037.ab1   606 
  523    UCD026F_F05_BE403597Td10P025A03P036H011F1_037.ab1   470 
  527  C UCD026R_F05_BE403597Td10P025A03P036H011R1_037.ab1    80 
  555    UCD026F_F05_BE403597Td10P025A03P036H011F1_037.ab1   502 
  559  C UCD026R_F05_BE403597Td10P025A03P036H011R1_037.ab1    48 
  567    UCD026F_F05_BE403597Td10P025A03P036H011F1_037.ab1   514 
  571  C UCD026R_F05_BE403597Td10P025A03P036H011R1_037.ab1    36 
  587    UCD026F_F05_BE403597Td10P025A03P036H011F1_037.ab1   534 
  591  C UCD026R_F05_BE403597Td10P025A03P036H011R1_037.ab1    16 
  599    UCD026F_F05_BE403597Td10P025A03P036H011F1_037.ab1   546 
Contig length: old 665, new 665

Contig length: old 665, new 665
New start: 0