No. words: 1169; after pruning: 1143


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:533)  528  0.00 0.00 0.19  UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1        1   534 (50)  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1   (52)   533     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1   585 
  140    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1    88 
  180  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1   406 
  212    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1   160 
  276  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1   310 
  388    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1   336 
  392  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1   194 
  432    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1   380 
  440  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1   146 
  460    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1   408 
  464  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1   122 
  488    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1   436 
  500  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1    86 
  504    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1   452 
  512  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1    74 
  544    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1   492 
  560  C UCD005R_G07_BE403803AS01P012G01G071R1_051.ab1    26 
  568    UCD005F_G07_BE403803AS01P012G01G071F1_051.ab1   516 
Contig length: old 635, new 636

Contig length: old 636, new 636
New start: 0