No. words: 1082; after pruning: 1056


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:533)  487  0.40 0.00 0.00  UCD005F_H07_BE403803AS02P012G01G071F1_049.ab1        1   495 (0)  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   (53)   534    40 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   587 
  109    UCD005F_H07_BE403803AS02P012G01G071F1_049.ab1    56 
  113  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   475 
  125    UCD005F_H07_BE403803AS02P012G01G071F1_049.ab1    72 
  129  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   459 
  141    UCD005F_H07_BE403803AS02P012G01G071F1_049.ab1    88 
  165  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   423 
  173    UCD005F_H07_BE403803AS02P012G01G071F1_049.ab1   120 
  181  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   407 
  189    UCD005F_H07_BE403803AS02P012G01G071F1_049.ab1   136 
  193  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   395 
  201    UCD005F_H07_BE403803AS02P012G01G071F1_049.ab1   148 
  213  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   375 
  229    UCD005F_H07_BE403803AS02P012G01G071F1_049.ab1   176 
  237  C UCD005R_H07_BE403803AS02P012G01G071R1_049.ab1   351 
Contig length: old 587, new 587

Contig length: old 587, new 587
New start: 0