No. words: 1117; after pruning: 1091


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:494)  493  0.00 0.00 0.00  UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1        1   495 (75)  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   (52)   495     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   547 
   72    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1    20 
   76  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   472 
   84    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1    32 
   96  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   452 
  104    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1    52 
  128  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   420 
  132    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1    80 
  136  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   412 
  140    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1    88 
  176  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   372 
  228    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1   176 
  240  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   308 
  252    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1   200 
  264  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   284 
  300    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1   248 
  308  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   240 
  320    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1   268 
  336  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1   212 
  472    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1   420 
  484  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1    64 
  488    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1   436 
  496  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1    52 
  512    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1   460 
  516  C UCD005R_A08_BE403803AT01P012G01G071R1_064.ab1    32 
  520    UCD005F_A08_BE403803AT01P012G01G071F1_064.ab1   468 
Contig length: old 622, new 622

Contig length: old 622, new 622
New start: 0